CyVerse Learning Institute - Container Camp 2020
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Getting Started

  • Learning objectives
  • FAIR Data principles
  • Code of Conduct
  • Pre-Workshop Setup
  • Location
  • Agenda
  • About CyVerse

Workshop Topics

  • Introduction to Reproducible Science
  • Basics of Linux
  • Training session in Docker
  • Training session in Singularity
  • Breakout sessions

Docker

  • Finding the perfect container
  • Introduction to Docker
  • Advanced Docker

Singularity

  • Introduction to Singularity
  • Advanced Singularity
  • Setting up Singularity file system
  • Singularity and High Performance Computing

Breakout Sessions

  • BioContainers
  • Containerized Workflows
  • SETUP
  • Why Snakemake
  • Other Workflow Managers
  • Docker for Data Science

CyVerse Topics

  • Booting a CyVerse Atmosphere instance
  • Tool integration in the Discovery Environment (DE)
  • Deploying apps in CyVerse Discovery Environment
  • Deploying interactive apps in CyVerse Discovery Environment

Useful Resources

  • Docker related resources
  • Singularity related resources
  • Other resources

Instructions and Reporting

  • For instructors!
  • Problems? Bugs? Questions?
CyVerse Learning Institute - Container Camp 2020
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University of Arizona Campus Resources

  • UA Campus Accessibility
  • UA Campus Transportation
  • Family Spaces and Lactation Support
  • BIO5 Institute
  • Transportation beyond BIO5 and UA campus
  • Banner UMC Cafeteria
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